Curriculum Vitae
Education
- Sep, 2020 - Now: Ph.D. Candidate in Computer Science, University of California, Davis
- Sep, 2015 - Jul, 2019: B.S. in Computer Science and Applied Mathematics, University of California, Davis
Upcoming Publications (†: Co-first)
- Li, F.†, Barboza, M.†, Weng, C.-Y.†, Cheang, S.E., Abrieux, A., Strandberg, E., Schaal, K., Bacalzo, N., Santos, E., Caster, R., Vairavamoorthy, V., German, B., Ahmed, S., de la Parra, J., Baar, K., Tagkopoulos, I., Lebrilla, C.B. and Siegel, J.B. (2024) “Molecular Basis of Protein Digestion of Animal and Plant Food Through Integrated Proteomics and Human Serum Metabolomics”, under review at npj Science of Food.
Publications (†: Co-first)
- Li, F.†, Youn, J.†, Simmons, G., Kim, S. and Tagkopoulos, I. (2024) “FoodAtlas: Automated Knowledge Extraction of Food and Chemicals from Literature”, Computers in Biology and Medicine. doi: 10.1016/j.compbiomed.2024.109072 (Website) (Link) (GitHub)
- Li, F.†, Youn, J.†, Millsop, C. and Tagkopoulos, I. (2024) “Predicting Clinical Trial Success for Clostridium difficile Infections Based on Preclinical Data”, Frontiers in Artificial Intelligence. doi: 10.3389/frai.2024.1487335 (Link) (GitHub)
- Li, F.†, Yoo, A.†, Youn, J.†, Guan, J., Guyer, A.E., Hostinar, C.E. and Tagkopoulos, I. (2024) “Prediction of Adolescent Depression from Prenatal and Childhood Data from ALSPAC Using Machine Learning”, Scientific Reports. doi: 10.1038/s41598-024-72158-9 (Link) (GitHub)
- Cheang, S.E., Charlie Weng, C.-Y., Bacalzo, N., Strandberg, E., Li, F., Barboza, M., Tagkopoulos, I., Baar, K. and Lebrilla, C.B. (2024) “Combining Proteomics and Metabolomics to Assess Protein Digestibility”, Current Developments in Nutrition. doi: 10.1016/j.cdnut.2024.102339 (Link)
- Li, F.†, Youn, J.† and Tagkopoulos, I. (2023) “Semi-Automated Construction of Food Composition Knowledge Base”, 2nd AAAI Workshop on AI for Agriculture and Food Systems. doi: 10.48550/arXiv.2301.11322 (Link) (GitHub)
- Aboud, O., Liu, Y., Dahabiyeh, L., Abuaisheh, A., Li, F., Aboubechara, J.P., Riess, J., Bloch, O., Hodeify, R., Tagkopoulos, I. and Fiehn, O. (2023) “Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment”, Biomedicines. doi: 10.3390/biomedicines11082261 (Link) (GitHub)
- Risner, D., Li, F., Fell, J.S., Pace, S.A., Siegel, J.B., Tagkopoulos, I. and Spang, E.S. (2020) “Preliminary Techno-Economic Assessment of Animal Cell-Based Meat”, Foods. doi: 10.3390/foods10010003 (Link) (GitHub)
Honors and Awards
- Mar, 2024: UC Davis Graduate Group in Computer Science PhD Fellowship Award ($20,000)
